Archive for June, 2009

What’s in that can??

Tuesday, June 30th, 2009

A mundane industrial mineral, Potter’s Rot, a Renaissance polymath, and climate change; what could these things possibly have in common? More than you might think. Lets start with that can of old talc (as in talcum powder).

The can had been sitting on a shelf in my wife’s pharmacy since at least the early 1990s. It looked much older than that (in my world, old equals cool). The wife thought it had been around since the hospital was built in the 1960s (translation: since hippies and Richard Nixon roamed the Earth). Produced by a well-known pharmaceutical company, it was labeled, simply, “purified talc.” Talc is a mineral. Not a particularly rare mineral but interesting. It’s related to micas and clays and widely used in ceramics, cosmetics, and, yes, pharmaceuticals. The wife patiently explained that it was used as a binder for compounding custom prescriptions. Curiosity got the better of me and I asked if I could have what was left in the can. The dear wife said yes, but she wanted the can back. I did say it was cool looking.

I took the gray powder back to my lab. I look at rocks and minerals using with x-rays. That surprises people sometimes. I don’t image them the way a dental x-ray would, rather I look at how the atoms in the sample bend the x-ray beam (called diffraction). This tells me something about the structure, or framework of the mineral. Lots of different minerals share the same chemical elements, but each has a unique structure-its “DNA.” The x-ray scan would tell if the stuff was actually talc, and if it was just talc or other stuff too. Not surprisingly, I found that the talc was talc, but it also had another mineral mixed with it: chlorite. This isn’t unusual as chlorite forms in the same environment as talc, and shares a similar chemistry. However, it casts doubt on the “purified” label. Of course, at the time it was produced it may have been pure enough.

Why my curiosity? The talc reminded me of a lab exercise I assigned to my Forensic Geology class. It involved analyzing various cosmetics. Cosmetics and paints are made mostly of various minerals. One brand of cosmetics they examined advertised that they were “So pure you could sleep in It.” and “free of chemicals, talc, fragrance…” you get the idea. I was curious about what minerals they did use, and why talc was considered bad. My students found three minerals in this particular brand, one being chlorite (we’ll ignore the other two for simplicity). Recall, chlorite is in the same broad family of minerals as talc (cousins if you will). Why did they substitute chlorite for talc? Was talc really unsafe? As it turns out, it depends.

Most people have heard of silicosis, which is an occupational lung disease caused by inhalation of crystalline silica dust and has been recognized since 1705. Bernardino Ramazzini (1633-1714) first observed silicosis in the lungs of stonecutters. The condition was known informally as Grinders Disease, or, wait for it-Potter’s Rot. Ramazzini is recognized as the father of occupational medicine. He was the first to document that repeated exposure on the job to dust, chemicals, repetitive motion, etc., could cause harm where casual exposure to the same things did not.

So, is talc hazardous? Turns out that there is a condition similar to silicosis known as talcosis, which is connected with exposure to talc dust from mining or processing talc products. Ramazzini again. A National Toxicology Program report (1993) reported that cosmetic grade talc caused tumors in lab rats forced to inhale talc for 6 hours a day, 5 days a week for 113 weeks. Maybe that cosmetics company was on to something. I dug a little deeper and found that, despite this study, the FDA had concluded that routine, or cosmetic exposure to most talc products was safe. Why the apparent contradiction? Remember the poor rats: 6 hours a day, 5 days a week, 113 weeks. That isn’t “cosmetic” exposure, that’s unprotected occupational exposure.

Now, let’s call in our Renaissance polymath: Phillip von Hohenheim (1493-1541). Better known as Paracelsus. He was botanist, alchemist, astrologer, philosopher, occultist, and physician. The guy even has a Facebook Page! He is also widely recognized as the father of toxicology. He’s famous for stating: “All things are poison and nothing is without poison, only the dose permits something not to be poisonous.” Its not so much what you are exposed to, but how much you’re exposed to that makes the difference. Wearing cosmetics containing talc, or using talcum powder after a shower, is not likely to cause problems. Work in talc mine or as a stonecutter for 40 years and talc, quartz, just about any dusty material, may become toxic. Something Ramazinni would write about 200 years later.

This brings me to carbon dioxide. The EPA recently declared that CO2 in the atmospheric was a threat to human health. Essentially defining it as a pollutant (which has big economic and health ramifications). This may sound odd, but its really not. Currently CO2 concentration in the atmosphere stands at 387 parts per million (by way of comparison, above 10,000-ppm and it gets toxic to humans). Despite its low concentration, it is vital for, among other things, microbial, plant and animal respiration. In humans, the trigger to inhale isn’t controlled by low blood-oxygen levels; CO2 levels control it. Take away CO2 and life gets hard. So how could this gas be considered a pollutant? To understand that we need to consider what else CO2 does. Most people understand that CO2 is necessary for temperature regulation in the atmosphere (its not the only thing, but its critical). Too little, we lose heat to space and things get cold. Too much and we get Venus. If we double atmospheric CO2 to, say 800-ppm individual animals and plants would hardly notice (no where near 10,000 ppm levels), but the effect on atmospheric temperatures and climate could be extreme. If CO2 levels get high enough to cause the climate to become dangerous to life then it’s following the dictum of Paracelsus: it is behaving as poison. The same way Ramazinni recognized that silica dust was toxic if you inhaled enough of it. So, is my wife in danger from a can of talc? Probably not. Is CO2 toxic? Is it a pollutant or necessary organic compound? It depends. “All things are poison and nothing is without poison, only the dose permits something not to be poisonous.”

Until next time,

Tom Williams

Science Times Tuesday

Tuesday, June 23rd, 2009

It’s Tuesday, and that can mean only one thing: time for another New York Times Science section round-up!

My favorite article today is about cave writings recently discovered in Kentucky of early Cherokee script. The discovery might be the earliest example of Cherokee writing, but that’s not why I like the article. I like it because it’s full of interesting historical information.

Did you know that the Cherokee had no written language until settlers arrived from Europe? Did you know that the entire Cherokee written language was developed by Sequoyah single-handedly, the only known instance of a sole individual accomplishing this feat?

Apparently, Sequoyah was convinced that the white man’s power stemmed from his ability to write. So he dedicated his life to creating a written language for his people. Many of his peers - including his own wife - thought his work was inspired by the devil and destroyed many early records of his work.

Within a decade, Sequoyah’s task was complete. Soon after, a Cherokee Babtist minister translated the New Testament and used it to teach the new written language. Within five years, “thousands of Cherokees were literate - far surpassing the literacy rates of their white neighbors.”

For more on this amazing tale, check out the article here.

Other interesting pieces include:

Animated Science

Monday, June 22nd, 2009

Have you ever seen the “End of the World” Flash animation outlining the threat of world annihilation via nuclear weapons? You know, where Australia is like, “WTF, mate?” In case you haven’t here’s a link.

Anyways, the video has nearly 7 million views. I thought, what if someone could harness the genius of this short, 93-second Flash animation to actually teach people science? What a great way to introduce the masses to research being done at major universities!

So after the light bulb went off in my head, I decided to give it a shot. This 2-minute video isn’t as funny, vulgar or nearly as well done as the aforementioned animation, but it’s my first try. Give me a break.

Anyways, the video describes how Professor Joe Cloud is using genetics and biology to create rainbow trout that produce the eggs of sockeye salmon, without even touching a female sockeye salmon. Take a look at the video here. The video should be on the University of Idaho’s homepage soon along with a photo gallery and story.

If you have any comments or suggestions about how my next one can be better, please feel free to let me know. But don’t be too harsh. Remember, this is my first attempt!

Also, here’s a link to a story from the Seattle Times about the project too.

HEV Humvee

Friday, June 19th, 2009

Did you know that several months ago the University of Idaho had an Army Humvee outfitted with a massive amount of lead-acid batteries? It was part of an ongoing project to develop hybrid-electric technologies and lead-acid batteries. And if the system can run a Humvee, chances are it can run your little car.

In case you missed it - and by the number of hits the video has gotten, you did - you can watch the video here.

The humvee has since moved on, but the research into lead-acid batteries and new HEV systems continues in the Microelectronics Research and Communications Institute (MRCI). In fact, Dean Edwards is trying to get a high performance racecar to test the batteries on next. So stay tuned.

Posterized by science

Wednesday, June 17th, 2009
Evolution 2009 Poster session as seen from the stands of the Kibbie Dome.

Evolution 2009 Poster session as seen from the stands of the Kibbie Dome.The Kibbie Dome housed poster sessions on Sunday and Monday night from the Evolution 2009 conference. Events such as these exhibit some of science's best ideals and practices.

Sunday and Monday night featured poster sessions at the Kibbie Dome during the Evolution 2009 conference. In my opinion, poster sessions bring out the best science has to offer and stand for its highest ideals.

A poster session is like a marketplace of ideas where everything is free. Grarduate students spend up to hundreds of hours preparing large posters that give brief, to-the-point information about their research projects.

Established professors, famous research scientists and graduate students still green around the gills rub elbows and peruse the gallery for something to catch their attention. Typically, the maker of the poster is standing by to answer questions and discuss the science behind the poster.

In this way, ideas are exchanged and new ideas dreamed-up on the spot. Collaborations can be formed. The frontier of science is pushed forward.

To me, this is the heart of what science is about. Extremely bright people coming together and sharing their ideas and experiences in order to move the human race’s body of knowledge forward.

I think it’s pretty cool. But then again, I’m a total geek.

The floor of the Evolution 2009 poster session.

Evolutionary biologists mingle and exchangee ideas during the Evolution 2009 poster session in the Kibbie Dome Monday night..

Science Tuesday at the Times

Tuesday, June 16th, 2009

Tuesday is one of my favorite days of the week. Not just because Monday is behind and the week looms full of possibilities, but because it’s science day for the New York Times.

The writers for the Times are all amazing, and they regularly cover fun and exciting stories. I make it a goal to read through most of the pieces each week. Subsequently, as a sort of public service, I offer to you a brief overview of my favorite peace, as well as brief descriptions of all the other articles I found worth the read.

Today, the main headline is a wonderful piece that just happens to fit in perfectly with the week’s topic of evolution. The two-page article outlines the difficulties and recent advances in discovering how life may have first appeared on Earth and what mechanisms may have driven its creation.

Getting molecules to go from non-living to living, complete with processes that allow it to procreate and begin an evolutionary line, is no easy task. Questions abound including:

  • Did the first proteins make the first RNA, or vice versa?
  • How could metabolism processes begin without a membrane, and if they began inside a membrane, how did the necessary nutrients get in there?
  • What kinds of conditions are best suited to the sparking of life; deep, hot rifts in the ocean floor or warm, evaporating ponds on the surface?

About a decade ago, these questions seemed unanswerable. But according to this article, significant steps have been made towards solving this question, and potentially creating life in a laboratory. But until that happens – if it ever happens – no explanation for the origins of life can be ruled out.

Other interesting reads include the creation of a miniature golf course that teaches astrophysics, the questions surrounding studies suggesting alcohol can be healthy in moderation, the effects of global warming already being seen in the United States, a developing trend of children choosing healthier options at restaurants, and an interview with one of the world’s foremost experts on ants.

Speciation caught black-handed?

Monday, June 15th, 2009

I ran across this article today on ScienceNOW and thought it was particularly relevant, given the Evolution conference going on here in Moscow.

In this article, it seems scientists may have found a species of bird currently in the process of becoming two new species, which is extremely rare.

In the South Pacific’s Solomon Islands, two varieties of flycatchers live on separate islands. One has a brown chest and the other a black chest. After some investigation into the two species’ DNA, scientists found that a single gene mutation is responsible for the difference of color.

Now, if scientists can show that black flycatchers prefer to mate with other black flycatchers and spurn the chestnut colored bretheren, it will be a prime example of how a single gene mutation can form a new subspecies.

Evolution can be discriminating

Sunday, June 14th, 2009
Professor Foster

Professor Foster

It’s Sunday afternoon and I find myself in a room full of nearly 70 people, each of whom is smarter than I am. It’s a little intimidating.

Luckily I’ve spoken with Professor James Foster from the University of Idaho before. So I am already familiar with the basics of his lecture on evolutionary computation, or genetic algorithms.

This topic is a perfect example of why the word evolution does not do justice to the field of evolutionary biology. Evolution as a category would not include a field that uses the awesome, raw power of evolution to solve everyday problems.

Or as Dr. Foster put it, “I bet Darwin never dreamed evolution would be used to design an airplane on a computer.”

Probably not.

The main gist of the idea is to use modern computer power to evolve the solution to a problem. Here’s how it works.

1. The computer chooses a random set of solutions to the problem. For example, the mathematical equation that describes the shape of an airplane’s wing.

2. Each solution is tested.

3. The best solutions are slightly modified by random “mutations” made by the computer and fused together into a new set of solutions.

4. The whole process is repeated until the best solution is found.

When you do this, sure enough, bit by bit the solution gets better and better. Dr. Foster’s example used the technique to figure out which genes were important in determining whether an individual was healthy or was afflicted by rheumatoid arthritis. The work was done by Jason Moore of Dartmouth.

Historically, evolutionary computation has been used to design airplane wings, electronic circuitry and many, many more useful designs.

So why not use this to solve all our problems?

It takes a long, long time to run a genetic program to completion, for one. And two, though you may find th e best answer, chances are you have no idea why it is the best answer, which most scientists and engineers would ultimately have a problem with. After all, do you want to fly in a plane that was built by an engineer who has no idea why it flies?

No “isms” please

Saturday, June 13th, 2009

Eugenie Scott, director of the National Center for Science Education, kicked off the Evolution 2009 conference tonight in the Kibbie Dome at the University of Idaho. Her speech centered on tips for conveying science in general - and specifically evolutionary biology - to the general public.

Scott was delivering the speech as the first ever winner of the Robert J. Gould Award, given for outstanding work in educating the general public about evolutionary biology, and it is easy to see why she won. Her speech was well thought out, intelligent without using too much jargon and scientifically sound. I even learned several things about evolution and how I might better convey its message to those who ask me questions, which was the point of the lecture.

Scott began by emphasizing the importance of conveying the “layers” of scientific knowledge. At the core, she said, are theories and laws that are no longer questioned and widely regarded as fact. Ideas such as the earth revolves around the sun, kinetic equations, laws of motion and evolutionary biology. Outside of this core circle is a layer of “frontier” science, which is what conferences such as Evolution 2009 are about. Scientists exploring the edge of knowledge, searching for ideas that fit with the core ideas and even work to enhance them. These ideas are debated, debunked and proven on a regular basis, which gives the public the perception that science is constantly at odds with itself and everything is “up for grabs,” when in fact, the core values are solid and not debated.

Lastly is a layer of “fringe” science, which includes concepts such as telekinesis and ESP. These concepts are thought to be so far removed from the core knowledge that few scientists explore them.

That does not mean, however, that they are false. If a scientist can prove their worth via the scientific method, these theories can move into the “frontier” realm, and even the core of scientific knowledge. An example is plate tectonics. The idea that the continents set on top of giant plates and move around the Earth’s surface was considered ridiculous in the just 60 years ago. But within a decade it had become core science.

Scott then touched on the difference between fact and opinion. Science can only deal with the natural world through natural experimentation and perception. As soon as you enter God into an equation, you can not keep an omnipotent presence constant, and the scientific method goes out the window. So one can test whether or not fertilizer makes a plant grow taller, but one can not test whether or not God made it so.

She then moved on and talked about evolutionary biology versus Darwinism. The latter has been set up to be an ideology by proponents of creationism and intelligent design. She urged scientists present to move away from the “ism.” Evolution is not a belief. It is a theory that best fits the facts currently known to scientists.

Finally, Scott touched on some specifics of the evolutionary tree. To think about evolution as a single string of ancestors and decendents is incorrect.

This is where I learned something.

The fossil record does not show direct lineage of evolution. Instead, it hints at what our common ancestors were like. For example, I may not have a photo of my great grandfather. But if I had a photo of his brother, I could make some pretty good guesses about what he looked like. Similarly, fossils do not show a species direct ancestor. It shows their great great great uncle. But it tells a lot about the genealogical line the two shared before that.

That’s why even though humans are decendent from apes, apes are still around. We didn’t decend from apes. We decended from an ancient species of apes that evolved into both humans and modern apes. It’s kind of like my sister and me. We’re different, but come from the same parents.

And she’s hairy and smells weird.

But the main point of the speech was that science cannot explain the supernatural. It can only explain the natural world through natural experiments. Science has to leave God out of the equation because it is impossible to test any idea or hypothesis with God in the equation.

Quote of the night: “Saying nothing of God is not the same as saying God is nothing.”

Greetings from Moscow, Idaho

Friday, June 12th, 2009

Welcome to Vandal Science, a scientific blog maintained by scientists at the University of Idaho. Our goal is to help you understand what it’s like to be a scientist in a laboratory while pointing out fun and interesting science news from around the world.

I won’t get into too much detail here (that’s what the, “Welcome to Vandal Science” page is for) or spend time talking about myself (that’s what the bio pages are for), but I did want to tell you about the big event in Moscow that is helping launch this blog.

Beginning today, over 1,100 scientists are coming to the Palouse to hear about the latest research in evolutionary biology. For four days, more than 600 talks and 200 posters will be presented as part of Evolution 2009, the annual meeting of the three major societies in evolutionary biology.

The event kicks off tonight at the Kibbie Dome at 8:00 p.m. PST with a keynote speech from Euginie Scott, executive director of the National Center for Science Education, about how scientists can learn from and improve on past mistakes in educating the general public about evolutionary science.

I will be attending this event and several scientific presentations throughout the weekend, and summarizing the sessions here. In time, my posts will be about new research findings, publications and grants from the Unviersity of Idaho, along with many fun and interesting stories I stumble upon from the internet.

And I won’t be alone. Eventually, several faculty members from the College of Science will join me on the site. I’m sure they’ll introduce themselves when they’re ready to begin. I hate to jump the gun and get this going before then, but this evolution conference was just too good of an opportunity to begin writing to pass up.

So stay tuned!