Archive for October, 2009

Life Finds a Way!

Saturday, October 31st, 2009
The author at a Yunotani hot spring. This spring used to supply hot water for the Yunotani spa (now closed).

The author at a Yunotani hot spring. This spring supplied hot water for the Yunotani spa (now closed). Photo by S. Yoshikawa.

Yunotani is a hydrothermal area inside the Aso caldera, not too far from the Aso Volcanological Laboratory (AVL), located in central Kyushu, Japan. Maybe thirty or forty years ago there was a hotel here that was used by visitors to the nearby hot springs. Now the hotel is closed, and the experimental geothermal power plant, originally built by NEDO (the Japanese agency for the Development of New Energy and Industrial Technology) stands nearby, decaying and unused. I don’t know why the hotel closed, but with so many spas in close proximity it’s easy to imagine that demand just wasn’t high enough to keep one more resort going.

This hydrothermal power plant provided power for the defunct hotel. Now, it rusts slowly away, unused.

This hydrothermal power plant provided power for the defunct hotel. Now it rusts slowly away, unused.

At one time Yunotani was an active volcanic area. Not just a geothermal area, but the site of phreatic vulcanism.  Phreatic vulcanism happens when hot, rising magma encounters shallow groundwater. The groundwater flashes to steam, and the sudden volume expansion is a kind of explosion that can leave behind a large crater. Ubehebe crater in Death Valley, California, is an example of this type of volcanic eruption.

The phreatic eruption at Yunotani happened in 1881, which is long enough ago that the trees and bushes have grown over the original scars, and I have a hard time finding evidence of the crater. Walking up the hillside above the hot springs and the original hotel, I find instead a grassy meadow and the ruins of some tumbledown shelters. I’m told this was a popular area for camping some years ago–thus the remains of the wooden buildings. There used to be great trees in this meadow, but they were cut down to make more space for camping. The stumps still remain, though, and I’m interested to see that each tree grew over a steam vent. Steam still rises from between the roots of the old stumps; when the trees were living, the steam provided a constant source of moisture that nourished the grove.

This tree, and many like it, grew over steam vents to take advantage of the year-around supply of water.

This tree, and many like it, grew over steam vents to take advantage of the year-around supply of water.

On closer inspection I can see that the steam still fosters life in this meadow. Not just the grass that grows so luxuriantly but, nestled in the roots of the old stumps, I can see growths of moss thriving on the condensate from the steam. What a perfect environmental niche for a plant that loves moisture and low light!

Moss, clustering in the tree roots.

Moss, clustering in the tree roots.

I suppose many people think of geothermal areas as harsh and devoid of life, but in fact the opposite is true. Hot springs and hydrothermal areas in general provide a rich niche for life, in spite of the apparently uninviting conditions that often prevail. Ever since Thomas Brock’s remarkable discovery in 1966 of thermophilic (heat-loving) organisms growing in a Yellowstone hot spring, it has been recognized that life abounds pretty much everywhere on Earth–and perhaps beyond. Even Yudamari, the hot, hyper-acidic lake in the crater of Nakadake volcano (see “A Visit to Nakadake Crater” in this blog) is likely teeming with life, although to the best of my knowledge nobody has looked for it yet in that inhospitable place. Thermus aquaticus (as the organism discovered by Brock came to be known) and other extremophilic organisms live in an astounding array of environments: hyper-saline, hyper-alkaline, hyper-acidic, and hyper-baric (high pressure), not to mention at temperatures to just over 120 degrees celsius (248 degrees Fahrenheit, the current record for the hottest temperature a viable organism has been found to tolerate). In fact, it has been said that perhaps the largest reservoir of biodiversity on our planet is not the rain forests, as many might think, but the genetic pool contained within the bacteria and archaea of the world’s hot springs.

What do these extremophiles eat? It turns out that all life gets energy from “oxidation.” I put the word “oxidation” in quotes, because the process doesn’t necessarily involve oxygen. Instead, oxidation is the process of pulling electrons off of one atom and dumping them on another; the excess energy generated from this exchange is the engine that powers all life, from the most primitive archaea to prokaryotic organisms such as amoebas and humans (amoebas and humans differing but little in this classification scheme).

Micro-platelets of iron pyrite, floating on the surface of a Yoshioka hot spring.

Micro-platelets of iron pyrite, floating on the surface of a Yoshioka hot spring.

Looking at the photo above, you can see a blackish scum floating on the surface of the hot spring pictured. That scum is actually a layer of microscopically small iron pyrite (”fool’s gold”) flakes, rafted by the surface tension of the thermal water. The chemical compounds that exist in hot springs can make a rich feast for microbial life.  Microbes are known to use a diverse array of chemical compounds as energy sources, including iron, sulfur, and even elemental hydrogen. Of course, every living thing (as far as we know) requires a source of carbon, too. Although most organisms prefer easily digested carbon sources, such as acetate or sugars, even carbon dioxide will do, and hot springs generally have carbon dioxide in abundance.
Like many people, I would have been ignorant of the incredible diversity of life in hydrothermal (and other extreme) environments without the patient explanations of University of Idaho geomicrobiologist Susan Childers. I have been privileged to work with her on a variety of projects, from checking the ability of thermophiles to derive energy from minerals in basalt to examining the antibiotic resistance of microbes in hot springs. My thanks to her for opening my eyes to all that can exist in a teaspoon full of muddy water!
NOTE: This blog was posted from Japan on October 31, 2009, which just happens to be Susan Childer’s birthday.  As I write this, most people in the U.S. are sleeping peacefully (it’s just after 3:00AM in America), so I can safely say I’m the first to wish Susan a happy birthday! I should probably add that any biological mistakes in this posting are mine alone…
Water from this free-flowing geothermal well in the Alvord Basin of Oregon, USA, nourishes vibrantly colored microbial life. This image, taken by Assistant Dean Tom Williams, was the cover image of the October 2004 issue of Geology.

Water from this free-flowing geothermal well in the Alvord Basin of Oregon, USA, nourishes vibrantly colored microbial life. This photograph, taken by College of Science Assistant Dean Tom Williams, was the cover image of the October 2004 issue of Geology.

Say Hello to Aleksandra Checinska

Thursday, October 29th, 2009

Any readers out there who try to continuously update a blog of any kind know that it can get to be tedious work on a day-to-day basis. That is one of the reasons I’ve been trying to get several faculty members here involved in blogging at least a couple of times per week. Besides lightening the load on my own shoulders to provide new material, I’m guessing you all out there are probably getting sick of my style and story choices!

So I was thrilled when Aleksandra Checinska, a Ph.D. candidate in Environmental Science, approached me with the idea of regularly contributing to the blog.

I could go on about her, but I think I’ll let her introduce herself.

“Hello Everyone! My name is Aleksandra Checinska. I graduated from Maria Curie-Sklodowska University in Lublin, Poland with M.S. in Biochemistry. I came to the University of Idaho for the first time as a visiting scholar in June 2008 to work on a research project in the Department of Microbiology, Molecular Biology and Biochemistry (MMBB) for a few months. In Spring 2009, I started a Ph.D. program in Environmental Science.

Besides conducting research, I have always been interested in the popularization of science, which resulted in my voluntary job of posting scientific news for the biotechnological web portal. I hope writing a blog will be a new input to this activity. Beyond the work, I love meeting my friends, hiking, watching movies, cooking and listening to my favorite chill-out music.

I hope you will enjoy my blog and thanks for reading!

Science blog… another new thing to try. And this is what being a student at the University of Idaho means.

Open minds. Open space.

Not only slogan for me anymore. That is everyday challenge which I really love to take up. I am a graduate student in Environmental Science program and this blog will be one of the ways I am going to share with others about what I work on here.

But how did this science blogging happen? In a scientific way - by chance? Definitely not! So I took this class about Integrating Science and Media as I have always thought that reliable information is crucial for our informative community all around the world.

However, we are overwhelmed with various information every hour, day, week and so on. Seems that we know more, but instead of that sometimes we can not deal with all these stuff and evaluate it properly and draw some conclusions. And when it comes to the latest research. I admire scientists who are updated on what is going on in their fields – new methods, devices and discoveries.

All of these to help to save the world.

But wait, wait. It is not far away from you. It happens here at the University of Idaho and probably on your bench and office, too. As my friend has said recently – he has not traveled a lot outside the United States, however, international students help him to know other places and cultures much better. So, maybe this blog help you familiarize a little bit about what research are carried on just around you, at the University of Idaho.”

Inaugural Innovation Awards

Wednesday, October 28th, 2009

In mid-September, I posted an entry about the Governor’s Innovation Summit, which brought together some of Idaho’s most creative entrepreneurs to discuss overcoming challenges and how to leverage high-tech success into career opportunities and economic growth.

I talked about how President Duane Nellis had already given many speeches on the topic, and how the University of Idaho was already well ahead of the game in the patenting and licensing of technologies created on campus.

Now, as another step in this direction of innovation, the Office of Technology Transfer is hosting the inaugural Innovation Awards on November 6. The event celebrates the accomplishments of several faculty, staff and students who have successfully obtained patents and licensed their ideas.

The recipients include:

  • Chien Wai/AREVA NP, Inc. - Technology designed to recover enriched uranium from the ashes of incinerated low-level nuclear waste.
  • Ken Cain/ImmumoPrecise Antibodies Ltd – An antibody for screening salmon and trout broodstock for the aquatic pathogen Flavobacterium psychrophilum, which causes Bacterial Cold-Water Disease and Rainbow Trout Fry Syndrome.
  • Harriet Shaklee/Twiga Foundation – BLOCK Fest, a program designed to help parents support the development of pre-math and science skills through block play for children ages eight months to eight years.
  • Donald Crawford/Natural Industries – The use of Streptomyces bacteria to protect the root system of plants and create a healthy growing environment within soil. The microorganism breaks down dead plant tissues and frees up soil from harmful thatch accumulation.
  • Keun Seok Seo/Veterinary Medical Research and Development, Inc. – FOXP3 Monoclonal Antibodies that detect FOXP3 regulatory T cells in cattle, which are involved in the regulation of the immune response. Also LND41A Monoclonal Antibodies that identify activated dendritic cells, which tells scientists if an immune response is beginning in cattle.
  • Jeff Stark/Potato Variety Management Institute – A84180-8, a potato variety released in 2007, is a late maturing, medium-russet with good culinary quality. Compared to the Russet Burbank, it has good resistance to internal and external defects, has a high vitamin C content, is more resistant to common scab and Verticillium wilt, and is less susceptible to soft rot and potato leaf roll virus.
  • Terry Quinn, Darren Owsley, Clifford Clark/Genesis Distributing, LLC – A web-based secure access management program that reduces time, money and headaches for granting and denying access to doors in multi-building managed complexes.
  • Ron Crawford, Terry Soule, Tom Hess/BioXcelerator Technologies, LLC - An optimization software program that is used in combination with reiterative, parallel experimentation to optimize industrial processes and outputs.

Also at the event, Alumnus Russell Strong will be presented with The Outstanding Alumni Innovator Award for the innovative approaches he has pursued in his business ventures since graduating from the college of engineering in 1976. Strong is the CEO of Integrated Vision, Inc. and 3D Agile, Inc. and styled the merged Ford, New Holland and FIAT tractor lines in a worldwide contract. Currently, he is revolutionizing the world of the military foot soldier by developing a 3,000 pound carrier of a 2,000 pound payload that provides new opportunities and agility in military applications.

In addition, the University of Idaho also will recognize individuals who have completed steps along the process to patenting a technology. These recognitions include 64 disclosures of discovery and 11 patent applications from July 2007 through June 2009.

For more information about the awards, see the official website.

Milk Money

Tuesday, October 27th, 2009

As my introduction to Vandal Science states, Idaho is so much more than potatoes. Though Idaho’s chief export is actually technology (think HP and Micron) the agricultural industry is obviously huge and important.

But believe it or not, when it comes to the value of exports, potatoes aren’t even at the top of the agricultural food chain. That position belongs to milk ($2.1 billion worth of sales in 2008). In fact, depending on who you ask, Idaho is the country’s third or fourth leading producer of milk and cheese.

The dairy industry thus has a major impact on Idaho’s economy and communities; a fact that was investigated in-depth by a study just released by the University of Idaho’s College of Agricultural and Life Sciences.

The major findings were that the dairy industry in southern Idaho - particularly in the counties of Jerome, Gooding and Twin Falls - shielded communities from the worst of the recession. These counties actually grew over the past decade while three-quarters of farming-dependent counties across the country shrank.

But not everyone is so sure that the industry is having a positive affect on these communities.

Growing farms means a growing population of low-income agricultural workers leading to higher child poverty rates and greater numbers of children who qualify for reduced-price school lunches. Hospitals must deal with a greater number of patients and there is always the concern of climbing crime rates.

And because many of these new workers are Hispanic - that population rose 85 percent in the same time frame - these issues are further complicated by language and cultural barriers.

Nonetheless, the study still showed that dairy’s growth has been largely positive.

The study, which relied on surveys and face-to-face questionnaires, found that crime rates in these new populations are declining and that local hospitals do not feel overwhelmed. The study found no evidence from county-level statistics that any single group put a large strain on health care or law costs.

For more information - and some good stories regarding the study - visit the Idaho State Journal, the Spokesman Review or the Twin Falls Times-News.

A Visit to Nakadake Crater

Saturday, October 24th, 2009
The author, with Nakadake crater in the background

The author, with Nakadake crater in the background. Photo by S. Yoshikawa.

Last Friday I was in my office at the Aso Volcanological Laboratory (AVL), working away on some equations (because I’m a hydrogeologist, I spend a lot of time working with equations and computer models!) when there was a knock on my door. I turned around to find my friend Yoshikawa-san standing there. “I must go to Nakadake crater to fix a seismometer. Also, I will take temperatures at the crater. Do you want to go?” Did I?! You bet!

Of the five main volcanos inside the Aso caldera, Nakadake is the only one that is currently active. There were eruptions in 1998 and 2004, and there is constant hydrothermal activity at the summit. Inside the summit crater is Yudamare (”Hot Water Lake”), an acid, fuming body of water that is surrounded by an atmosphere so poisonous that it can’t be approached very closely. Of course, being a hydrogeologist that studies geothermal systems, I’ve been wanting to visit this hydrothermal Mecca. Here was my chance!

Nakadake is one of the few volcanos in the world where visitors can go right up to a viewing area close to the rim to look down into the active crater. As we drove up the road there were dozens of people walking up, walking back, or taking cars, buses, or the alpine tram to the summit. What a zoo, I thought. Still, most people can only go as far as the observation platform, I reasoned–as soon as we get out of the parking lot we’ll be on the rim and away from the crowd. I had no idea how right I was! It didn’t take long before we had left the bus loads of school children and tourists behind, and then… my first view into the crater!

Standing on the rim of Nakadake crater.

Standing on the rim of Nakadake crater (photo by S. Yoshikawa).

I can’t even describe to you how it felt to stand on the edge of that unworldly landscape. There were no sounds but the rush of wind and, far below, the hiss of steam jetting out of the fumaroles in the crater wall. Yudamare lake looked like a weirdly green, steaming caldron, roiling and bubbling, and the upper part of the crater looked like a vision from Dante’s Inferno (no exaggeration!). I asked Yoshikawa-san, a little hesitantly, about going down inside the crater. “Well, with our gas masks we could go down as far as that valley over there” he gestured thoughtfully to the area above the fumaroles, “but if we go below that, I think we will die.” Okay, scratch that idea…

About this time I heard, indistinctly, a loudspeaker announcement over at the summit lookout, and noticed all the tourists in the parking lot were leaving. “What’s going on?” I asked. “Oh, they are closing the summit area because of the gas.” Sulfur dioxide and hydrogen sulfide come up out of the fumaroles. In low concentrations these gases cause the rotten-egg smell many people associate with hot springs, but in high concentrations they combine with the moisture in your lungs and turn to sulfuric acid. I knew several tourists were killed that way a few years ago. “Well, okay” I said. I started packing up our stuff, but Yoshikawa-san stopped me with a smile. “It does not apply to us” was all he said. I was thinking privately that I wasn’t sure whether it should apply to us or not: my nostrils were stinging and my skin was itching from the tiny droplets of acid that floated in the air. “We’re lucky,” Yoshikawa-san said, looking up at the sky. “There is good wind today, so it’s not so bad here.” Indeed…

Setting up the infrared camera to take temperature readings in the crater.

Setting up to take temperature readings from the crater rim.

Yoshikawa-san takes the crater's temperature.

Yoshikawa-san takes the crater's temperature.

In my research I work a lot with hot spring temperatures, and generally we collect them by the hundreds or thousands, using digital thermometers and various kinds of thermocouple probes. Without being able to access the crater directly, though, the AVL scientists use a different method: an infrared camera. After a brief set-up, Yoshikawa-san started taking temperature data. The lake, it turns out, was only 60-65 degrees celsius (140-150 degrees Fahrenheit), which would still cook an egg, but at least it wasn’t boiling. The extreme acidity of the water, however, was another matter, since the lake boasts a pH of 1 or less (it has been known to go into negative numbers). Then Yoshikawa-san turned the camera on the area of fumaroles in the crater wall.

Fumaroles in the Nakadake crater wall.

Fumaroles in the Nakadake crater wall. The yellow stains are native sulfur deposits left by the steam.

Close-up of the Nakadake fumaroles.

Close-up of the Nakadake fumaroles.

“Can you read the temperatures?”  he asked. I grabbed greedily at the camera, but stuttered a little as I read out the values I saw there. Was this thing working right? I shook my head. “Uh, it looks like the maximum temperature I see is… about 530 degrees celsius…” That’s 986 degrees Fahrenheit! Yoshikawa-san showed no surprise. “Yes, at night you can see the vents glowing in the dark.” Whoa….

Finally we gave up on temperature monitoring and fixed the faulty seismometer. My role in that was pretty minor: “Jerry-san. Please jump up and down” Yoshikawa-san asked very politely. “Ah, still not working.  Please jump again.” Eventually he got it working and we began the trek back to the observation platform. On the way, I had a thought. “Yoshikawa-san,” I began, “you said you have to go next month to change the temperature sensors that have gone bad?” “Yes” was all he said, not looking at me. “You have to go inside the crater to change the sensors, don’t you?  Down into that valley?” “Yes.” Still no expression. “You… you wouldn’t go without me, would you?” He looked at me and smiled. “No, Jerry-san. I would not go without you!” We both laughed.

I can’t wait…!

Photo and matching thermal scan of the fumarole area of Nakadake crater.  The temperatures shown are in degrees celsius.

Photo and matching thermal scan of the fumarole area of Nakadake crater. The temperatures shown are in degrees celsius.

Building a New Energy Infrastructure

Thursday, October 22nd, 2009

Everyone knows the United States - and the entire world - needs to reduce or eliminate its dependence on fossil fuels. Where opinions differ, however, is what technologies, methods, practices and policies should be implemented to achieve this goal.

There are a ton of choices. Hydropower, nuclear energy, wind energy, solar cells, carbon sequestration, carbon caps, carbon exchanges and smarter energy grids all come to mind, just for a start. Not one of these ideas is a silver bullet. It will take a combination of many efforts to help reduce our society’s impact on the global environment.

Enter the University of Idaho’s third annual President’s Sustainability Symposium.

The theme for the event is “Transition to Sustainable Energy Systems.” Beginning today and extending into tomorrow, the event in Idaho Falls will focus on electricity, including issues with generation, transmission and utilization in a carbon-constrained economy.

If any readers happen to be in that part of the state, I highly recommend dropping by the Shiloh Inn and checking out a few of the lectures. Below is an excerpt from a press release describing the event.

The symposium features five presentations on topics ranging from carbon markets to energy legislation, a panel discussion on sustainable electric energy, and an innovative, educational game designed to stress the trade-offs required to reduce carbon emissions.

Speaker highlights include: Steven Aumeier, chair of the Idaho Strategic Energy Alliance board of directors, who will discuss the alliance’s mission in relation to developing Idaho’s energy future; and Mark Allen Bernstein, managing director of the University of Southern California Energy Institute, who will speak about water and energy, how the two issues are intertwined and what further information is needed to understand that relationship.

The lectures will be capped by a panel session that features experts in hydropower, economics, public affairs, carbon sequestration, geothermal energy, building efficiency and nuclear engineering. After each panelist presents information on their area of expertise, the entire panel will engage symposium participants and audience members in an open forum for dialogue on the advantages, disadvantages, trade-offs and ideal mixes of strategies available to meet the demand for a growing electric infrastructure.

The symposium concludes with a facilitated session of the Princeton Stabilization Wedges game designed to help participants better understand the trade-offs and limitations of technologies and policies to both increase electricity and reduce carbon emissions. This innovative teaching tool challenges teams composed of symposium participants to choose among available technologies that could be scaled-up to reduce carbon emissions by 7 billion tons per year over the next 50 years. The task is made more challenging – and realistic – by the need to balance costs, politics and public perception.

Asbestos… Just the Facts, Please

Wednesday, October 21st, 2009

Asbestos in it's natural form.

Asbestos in it's natural form.

If you’re like me, you’ve grown up – or otherwise spent the past 25 years of your life – afraid of many random things, such as asbestos. When I hear the term, all I think of is the pink, fibrous linings often found behind dry wall in older buildings. I’m not even sure whether or not this stuff is asbestos. It probably isn’t. I just know the media says I should be afraid of it.

That’s not without reason. It’s been shown that workers exposed to high levels of the mineral (yes, it is a rock) while either mining or processing it into usable forms can have health problems. These range from lung cancer to mesothelioma, the latter of which can kill in a matter of years.

But since asbestos is a naturally occurring material, most of us must come in contact with at least a little of it every single day. This would lead me to believe that the worrying over ensuring every little ounce of asbestos was removed from my fraternity house several years ago was fairly pointless.

And apparently, my belief is probably right.

Mickey Gunter is a faculty member in the department of geological sciences, and also happens to be one of the world’s foremost leading experts on asbestos. He travels the world presenting the facts on asbestos – both processed and in its natural form. He also testifies in numerous trials around the country, including the recent big one in Libby, Montana, where an entire town sued a mining company for creating a cloud of dust over their town containing asbestos for decades (they were acquitted).

But as I mentioned, his primary goal is education about the facts. He puts them out there and then lets individuals come to their own conclusions. In fact, he is currently (as in today) leading an entire day’s worth of presentations about asbestos in Portland at the annual meeting of the Geological Society of America.

During a recent interview, Gunter pointed me in the direction of some interesting information, which I thought I’d share with you. So here it goes.

  • The acceptable levels of asbestos exposure in buildings – set by the Federal government – are much lower than the acceptable levels set by OSHA for the workplace.
  • Many people assume just one fiber of asbestos is enough to cause a disease and want zero exposure. However, because the average human inhales about 10 cubic meters of air every day, a normal human inhales 3,900 fibers of environmentally natural asbestos every day.
  • Asbestos abatement is a multi-billion dollar industry that has a large interest in maintaining the illusion that asbestos must be completely removed from all public buildings and workplaces.
  • Asbestos is now the reason of the longest-running mass tort litigation in U.S. history.
  • Annual claims against major defendants have increased sharply over 1990s. For example, defendants who were receiving 10,000 to 20,000 claims per year in the early 1990s were receiving three to five times as many claims per year by the year 2000.
  • Increasing numbers of claimants primarily reflect rising awareness of asbestos-related injury and of the availability of legal remedies, most likely resulting from increasing access to information (e.g., from the Internet) and lawyer advertising.
  • Based on the available data, it appears that a large and growing proportion of the claims entering the system in recent years were submitted by individuals who at the time of filing had not suffered an injury that had as yet affected their ability to perform the activities of daily living, although they had suffered a legally cognizable injury.
  • At least 8,400 entities have been named as asbestos defendants through 2002.
  • Total spending on asbestos litigation through 2002 was about $70 billion. About $21 billion of which was spent on trial defense and $49 billion on gross compensation.
  • Of that $49 billion, about $30 billion was given to claimants and $19 billion was spent on “transaction costs,” which to me sounds a lot like “lawyers.”

The above facts were taken from a study conducted by the RAND Corporation for the U.S. Government.

It is difficult to calculate just how many of these claims can be legitimately tied to asbestos because most of the cases come in the form of lung cancer, which is caused by numerous sources, not the least of which is smoking.

However, I’m willing to bet that the number of people asbestos actually causes harm to is nowhere near worth the costs associated with the courts and its removal from older buildings. Personally, I would much rather spend the money on fighting obesity, heart disease, smoking, diabetes and other issues that affect a lot more people.

But that’s just me. What do you think?

Focusing on Research

Tuesday, October 20th, 2009

During his inauguration speech this past Friday, President Nellis announced four areas of focus that the University of Idaho will direct much of its attention on growing in the coming years. These areas were identified because they:

  • build on existing strengths
  • focus on basic as well as applied research
  • are competitively advantageous for the university to pursue
  • can attract external funding
  • address issues important to the region, state and nation
  • as a whole, the four areas encompass a wide range of disciplines
  • they are sustainable objectives

So without further ado, here are the four areas and a brief explanation of what it all means.

Transition of landscapes and the structures they support from wilderness to urbanization

Several years ago, both Boise and Coeur d’Alene were among the fastest growing cities in the country. These growing communities are an excellent opportunity to study how urbanization affects the environments around them. What does growth do to forests, streams and lakes? How can a city best balance expansion with maintaining agricultural lands? The University of Idaho is in a unique position to study these types of questions as these two cities continue to grow and expand.

Nexus of energy production and use, agriculture and the environment

When one wants to use water for energy production, it affects how much water is available for agriculture. When one wants to use water for irrigation, it affects how much is available for urban growth. Both of these uses affect how much water remains in the natural environment. Studying how these systems interact is an important question - one that the entire country needs answers to. Additionally, Idaho is home to the Idaho National Laboratory, the only national laboratory devoted to nuclear energy. A growing partnership with this institution places the University of Idaho in a prime position to lead the next nuclear revolution.

Natural and Induced Modifications of Living Systems

What does that mean you ask? Well, it means evolution. But not the “controversial” topic of whether or not humans and apes descended from a common ancestor. We’re talking about evolution scientists can actually see. Bacterias that evolve resistances to drugs. Microorganisms that evolve into deadly community structures. How the immune system and pathogens co-evolve in the ongoing arms race of body versus disease. Thanks to a very strong group called IBEST, the University of Idaho is one of the leading institutions in these fields.

Science, Technology, Engineering and Mathematics (STEM) education

The Federal government has recognized for decades that Americans are falling behind their peers in the STEM disciplines from an early age all the way into higher education. How we get young people intersted and involved in these areas, and retain them in these fields, is a war that must be waged with every weapon we have in the arsonal. The University of Idaho intends to lead the expansion of these fields from K-20 initiatives into rural, urban and under-represented populations throughout the state and region.

Welcome to AVL!

Saturday, October 17th, 2009
The Aso Volcanological Laboratory

The Aso Volcanological Laboratory

I’m a fortunate guy! I love what I do; in fact, I can’t imagine another job that would be so nearly perfect for me! Besides teaching class and doing research at the Moscow campus of the University of Idaho, my job allows me–requires me–to travel to all sorts of unusual and beautiful places around the world. Over the last few years I’ve been to Norway, Scotland, Spain, Chile, New Zealand and Australia (to name a few), but it’s not the travel itself that is so great… it’s what I get to do when I get there!

Right now I’m spending my sabbatical leave in the southernmost of the home islands of Japan (Kyushu) at Kyoto University’s Aso Volcanological Laboratory (AVL). No, I’m not a volcanologist–that would be the University of Idaho’s Dennis Geist. I’m a hydrogeologist that studies the flow of groundwater and other fluids (for example, steam, hydrocarbons and carbon dioxide), mostly in relation to energy systems. I’m particularly interested in geothermal systems, and when you mix groundwater with the heat from volcanos there’s plenty of geothermal energy to go around!

In any case, I’m here at the AVL because the research faculty and staff invited me to study the geothermal systems associated with the volcanos of central Kyushu.  The AVL is actually located in the center of an enormous volcano (the Aso Volcano).  Many of you may be familiar with the idea that Yellowstone is a giant volcanic caldera–a so-called ’supervolcano’–but in fact it is only one of a number of these large calderas that can be found around the globe.  One of the largest volcanic caldera in the world is… Aso!  It’s roughly elliptical in shape, 18km across in one direction and 25km across in the other, and it’s so huge there are many towns and villages contained completely within the crater!  To give you an idea of just how big this volcano is, I climbed up on the roof of the AVL and took a few photos.  The first one is looking north.  The skyline that you see, as far away as is visible in the photo, is the northern edge of the caldera:

The western edge of the Aso caldera.

Looking towards the northern edge of the Aso caldera.

Looking west, the caldera rim is closer.  The notch that you can see in the center of the photograph is the place where the crater wall collapsed tens of thousands of years ago.  Currently that notch is where the Shirakawa (White River) runs out of the caldera and onto the surrounding plane.

The eastern rim of the Aso caldera.

The western rim of the Aso caldera.

The last great volcanic eruption (and I mean great–a worldwide catastrophe) was around 90,000 years ago.  It was this giant eruption that formed the present day caldera, but the volcano has been active ever since.  The most recent eruptions (not supervolcanic eruptions, just “normal” ones) were in 1998 and 2004.  Most of the recent volcanic activity has been centered on Nakadake crater, one of the five main cones within the larger Aso caldera.

The author, standing on the roof of the Aso Volcanological Museum (different that AVL), with Nakadake in the background.

The author, standing on the roof of the Aso Volcanological Museum (different than AVL), with Nakadake in the background.

Those of you that read my last post know that I visited the Hachobaru geothermal plant last weekend; at 110MWe, Hachobaru is the largest geothermal power plant in Japan.  It may surprise you to know that Idaho has perhaps the largest untapped geothermal potential in the U.S., but it’s true!  Actually, there is quite a bit of “direct use” geothermal (that is, using hot groundwater for heating buildings, etc.) in the Boise area and one commercial power plant (the Raft River plant), but there are also lots of other high temperature resources. Many of these are located on public lands and are not readily accessible; however, with the current emphasis on green and renewable energy geothermal has a bright future in Idaho!

Meet President Duane Nellis, the Scientist

Friday, October 16th, 2009

President Nellis gives a speech with his wife, Ruthie, looking on.

President Nellis gives a speech with his wife, Ruthie, looking on.

President Duane Nellis has a long history of scientific research in the field of Geographic Information Systems (GIS) and remote sensing. Read as he talks about his experiences in the field from his undergraduate days at Montana State University to his days as Vice President for Research at Kansas State University and his views of the importance of research activities at a university in general.

How did you become interested in studying GIS and earth sciences?

I began in engineering, but eventually looked for something that allowed me more flexibility in my curriculum because I’ve always had broad interests. I looked at earth sciences because I’ve always been interested in discovering new areas while traveling with my parents. Plus, my wife, Ruthie, was in earth sciences when I was looking for a major and her classes seemed like a good fit for my interests.

It seems to have worked out well. Did you get to do any research as an undergraduate?

Quite a bit, actually. Especially at the junior and senior level. I had a capstone experience summer project, for example, where I looked at rural land use patterns and characteristics in northwest Montana. That was the start of some of my interest in land analysis and natural resource use.

So apparently you enjoyed the experience though because you kept with it, going on to graduate school.

The university educational experience was like a light bulb going on in my head. It was just so refreshing to be in an environment that allowed me to really do the things for which I really had a passion. My master’s research looked at the effectiveness of Oregon legislation that was meant to protect prime agricultural lands from urban development east of Corvallis. I used aerial photographs taken over a 10-year period and examined the changes that had occurred in land use.

I see that you finished your degree in just over a calendar year before leaping into your Ph.D. work. That must have been a lot of work.

It was certainly a fairly intense period. One thing that was really evolving nationally in geography was remote sensing. My dissertation focused on application of remote sensing in irrigation for agriculture. I was intrigued by the impact that center pivots were having on water use, irrigation and crop production. I looked at whether there were inefficiencies or irregularities in irrigation water delivery and different types of irrigation systems.

How could you tell that from aerial data?

I used thermal infrared imagery to detect where water delivery canals were leaking, for example. Soils have a different temperature where there are leakage sites. You can also delineate them with thermal imaging.

Back then, there was no GPS except for military purposes, so one of the challenges was what was called “ground truthing” or ground inspections. That’s where I correlated ground data with satellite data or aircraft data.

It sounds like you were working with some pretty rudimentary equipment by today’s standards.

Early satellite data had more coarse resolution - we thought we were in 7th heaven when we got 30-meter resolution. More recently, when I was Provost at Kansas State, I had an image of Manhattan, Kansas, from commercial satellites that had four-meter resolution.

And I remember first setting up our computers to process satellite data. The discs were 8-inch floppies; to do a statistical analysis I would start the computer, go home for dinner and come back a couple of hours later. It took that long to run the data. Today, such processing can be done on a laptop.

What sorts of research did you get into after you completed your dissertation?

At Kansas State, I did quite a bit of research out in western Kansas in the high plains region and – again using satellite data – tried to develop a model for estimating water use. The idea was to apply my model to areas that did not have water meters so that they could get some estimate of water use in the Ogallala Aquifer region where ground water depletion was an issue.

I also worked with bison at a long-term ecological research site at the Konza Prairie, part of which was fenced and supported herds of bison. We were interested in their grazing patterns and what impacts they were having on the grassland ecosystem in the tall grass prairie reserve.

Sounds pretty fascinating.

President Duane Nellis.

President Duane Nellis.

Actually, it more fascinating. I also had the opportunity to look at the rural land-use system in Botswana in southern Africa. Historically, one of the issues in Botswana is overgrazing and desertification. I worked on a collaborative team to develop a series of vegetation indices to estimate grazing pressure on the edge of the Kalahari Desert where they graze cattle.

While we were there, we learned that the northern part of Botswana was having issues too, with a high density of elephants. We examined elephant pressure on the landscape from satellite data. Because elephants tend to debark trees and even push them over, it’s quite impressive to see their impact on the landscape.

Did you come out of Africa with any interesting stories?

When I was in Botswana, there were all different varieties of Acacia, many of which have these huge thorns – almost like fishhooks – that if you got them stuck in your skin, it was very painful. I had one such thorn go through my heavy boot into my foot.

And in Africa was the first time I had a chance to use a GPS system in the field and it was really neat. Once we were in the field, we were out on the fringes of the Kalahari Desert and had been doing field work throughout the day, when all of a sudden the battery pack on the GPS went dead. We were using it to keep us on track because the field maps we had were not very accurate.

We had a reserve battery pack, so we plugged that in, but of course it didn’t work. So we were out on these sand tracks and none of us spoke the native language. We were going into these villages trying to find our way back to our base village and looking at sun angle for the time of the day and direction.

Luckily, we knew the general direction of the main road, so we were able to make it out. But we learned early on not to become too reliant on technology out in the field.

I’ll bet your students loved to hear stories like that in class.

Absolutely. I found that when I was able to bring in my own research into the classroom to use as an example, it had a huge impact on student learning. I think sharing data with students in a laboratory setting and having them come up with their own conclusions helps enrich the student experience.

I think that’s what’s exciting about being at a research university like the University of Idaho. Sometimes people think some professors are just doing research and that they don’t really care about teaching. But what I have found is that some of the most outstanding teachers are also the most outstanding researchers.

Speaking of the University of Idaho, do you see a lot of your areas of expertise in use on campus?

The things I’ve had experience in are directly applicable in forest analysis, like with the pine beetle infestations as well as in agriculture and water, which is such a crucial resource in this state. Remote sensing and GIS has tremendous applicability. For example, if we can gain understanding about water efficiencies more fully through this kind of technology, then we can maximize the economic gain through agricultural production. Maybe through the use of these types of technologies we can gain more efficiency in the system and better manage it for long-term sustainability.

Any chance you might jump in and get involved, lending us some of your expertise?

Well, ever since I became a provost at Kansas State, though I continued to keep up with some general reading, it has been hard to keep up with the accelerated changes in remote sensing and GIS. It’s just evolving so rapidly. But I still have a passion for my area of expertise in remote sensing and I am still intrigued by the technology and software.

And even though I wasn’t the lead on the project, I coauthored a remote sensing book that was recently published. I was very much involved in writing it, especially the chapter I authored on remote sensing of crop land agriculture. That allowed me to catch up on where the literature is on remote sensing.

But keeping up with GIS and remote sensing technology has become almost a hobby because now there’s just no time. I don’t want to divert time from being President. I mean that’s my number one, two, three, four, five and sixth priority!